refs/refs/fhir-to-omop-demo/demo/translate/map/Practitioner.jq

 1#
 2# Maps FHIR Practitioner to OMOP provider
 3#
 4include "fhir";
 5#include "fhir/env";  # provides fhir_server_url, type, etc
 6#             ^ just an idea, not implemented.
 7
 8# Creates a link that work in the local hapi server.
 9def hapi_url:
10  # Would be nicer if there was a module for accessing env variables for this.
11  "http://localhost:8080/Practitioner/\(.id)"
12;
13
14
15Practitioner |
16[
17  "provider",              # OMOP pracitioner table
18    .id,                     # provider_id
19    null,                    # provider_name               # See PractitionerRole.display
20    .npi,                    # npi
21    null,                    # dea
22    null,                    # specialty_concept_id
23    null,                    # care_site_id
24    null,                    # year_of_birth
25    .gender_concept_id,      # gender_concept_id
26    hapi_url,                # provider_source_value       # synthea ID might be better here.
27    null,                    # specialty_source_value      # See PractitionerRole: eg - "General Practice"
28    null,                    # specialty_source_concept_id # See PractitionerRole: eg - 38004459
29    .gender,                 # gender_source_value
30    null                     # gender_source_concept_id
31],
32[
33  "person",                # OMOP person table
34    .id,                     # person_id
35    .gender_concept_id,      # gender_concept_id
36    .year_of_birth,          # year_of_birth
37    null,                    # month_of_birth
38    null,                    # day_of_birth
39    null,                    # birth_datetime
40    null,                    # race_concept_id
41    null,                    # ethnicity_concept_id
42    null,                    # location_id
43    .id,                     # provider_id
44    null,                    # care_site_id
45    hapi_url,                # person_source_value
46    .gender,                 # gender_source_value
47    null,                    # gender_source_concept_id
48    null,                    # race_source_value
49    null,                    # race_source_concept_id
50    null,                    # ethnicity_source_value
51    null                     # ethnicity_source_concept_id
52]
53|
54@tsv
55