refs/refs/fhir-omop-ig/input/maps/condition.fml

 1/// url = 'http://hl7.org/fhir/uv/omop/StructureMap/ConditionMap'
 2/// name = 'ConditionMap'
 3/// title = 'Mapping Condition resource to Condition Occurrence OMOP Domain'
 4/// status = 'draft'
 5/// description = "This mapping maps FHIR Condition instances to OMOP Condition Occurence Table objects."
 6
 7uses "http://hl7.org/fhir/StructureDefinition/Condition" alias Condition as source
 8uses "http://hl7.org/fhir/uv/omop/StructureDefinition/ConditionOccurrence" alias ConOccTable as target
 9
10group ConditionOccurrence(source src : Condition, target tgt : ConOccTable)     {
11        // src.id as id -> tgt.condition_occurrence_id = cast(id, "integer");
12        //src.subject as s -> tgt then {
13		//s.identifier as sid -> tgt then {
14		//	sid.value as a -> tgt.person_id = a;
15		//    };
16        //};
17        src.code as s -> tgt then {
18            s.coding as sc -> tgt then {
19                sc.code as a -> tgt.condition_concept_id = a;
20            };
21        };
22        src.recordedDate as rd -> tgt.condition_start_datetime = cast(rd,"dateTime"), tgt.condition_start_date = rd;
23        src.onset : dateTime as osd -> tgt.condition_start_datetime = osd, tgt.condition_start_date = cast(osd, "date");
24        src.abatement : dateTime as abdt -> tgt.condition_end_datetime = adt, tgt.condition_end_date = cast(abdt, "date");
25        src.category as s -> tgt then {
26            s.coding as sc -> tgt then {
27                sc.code as a -> tgt.condition_type_concept_id = a;
28            };
29        };
30         src.clinicalStatus as s -> tgt then {
31            s.coding as sc -> tgt then {
32                sc.code as a -> tgt.condition_status_concept_id = a;
33            };
34        };
35        
36        //src.encounter as s -> tgt then {
37		//    s.identifier as sid -> tgt then {
38		//    	sid.value as b -> tgt.visit_occurrence_id = b;
39		//	};
40		//};
41         src.evidence as s -> tgt then {
42            s.concept as sc -> tgt then {
43            sc.coding as sci -> tgt then {
44                sci.code as a -> tgt.condition_source_concept_id = a;
45            };
46        };
47    };
48};
49