OMOP Procedure-domain codes (example subset)

omop-procedure-codes OMOP domain: Procedure 3 includes

Codes that route a FHIR Procedure (or domain-routed Observation / DiagnosticReport / Condition) to the OMOP `procedure_occurrence` table. Authoritative expansion: vocab.concept WHERE domain_id = 'Procedure' AND standard_concept = 'S' (~85K standard concepts, almost entirely SNOMED). Non-standard source vocabularies (ICD10PCS, ICD9Proc, CPT4, HCPCS, OPS) map *to* SNOMED via concept_relationship 'Maps to' and become Procedures on the OMOP side.

compose.include

include · SNOMED CT

vocab: SNOMEDloaded ✓ 5 codes

http://snomed.info/sct

Code	Display
80146002	Appendectomy
232717009	Coronary artery bypass graft
816077007	MRI of brain
38102005	Cholecystectomy
73761001	Colonoscopy

include · CPT-4

vocab: CPT4not loaded 4 codes

http://www.ama-assn.org/go/cpt

Code	Display
44970	Laparoscopy, surgical, appendectomy
33533	Coronary artery bypass, single arterial graft
70551	Magnetic resonance imaging, brain, without contrast
45378	Diagnostic colonoscopy

include · ICD-10-PCS

vocab: ICD10PCSnot loaded 3 codes

http://hl7.org/fhir/sid/icd-10-pcs

Code	Display
0DTJ4ZZ	Resection of appendix, percutaneous endoscopic approach
B030ZZZ	MRI of brain
0FT44ZZ	Resection of gallbladder, percutaneous endoscopic approach

Authoritative expansion (run against the loaded Athena vocab)

SELECT vocabulary_id, concept_code, concept_name FROM vocab.concept WHERE domain_id = 'Procedure' AND standard_concept = 'S'

Raw JSON

{
  "resourceType": "ValueSet",
  "id": "omop-procedure-codes",
  "url": "https://fhir2omop.health-samurai.io/ValueSet/omop-procedure-codes",
  "version": "0.1.0",
  "name": "OmopProcedureCodes",
  "title": "OMOP Procedure-domain codes (example subset)",
  "status": "draft",
  "experimental": true,
  "description": "Codes that route a FHIR Procedure (or domain-routed Observation / DiagnosticReport / Condition) to the OMOP `procedure_occurrence` table. Authoritative expansion: vocab.concept WHERE domain_id = 'Procedure' AND standard_concept = 'S' (~85K standard concepts, almost entirely SNOMED). Non-standard source vocabularies (ICD10PCS, ICD9Proc, CPT4, HCPCS, OPS) map *to* SNOMED via concept_relationship 'Maps to' and become Procedures on the OMOP side.",
  "extension": [
    {
      "url": "https://fhir2omop.health-samurai.io/StructureDefinition/omop-domain",
      "valueString": "Procedure"
    },
    {
      "url": "https://fhir2omop.health-samurai.io/StructureDefinition/omop-expansion-sql",
      "valueString": "SELECT vocabulary_id, concept_code, concept_name FROM vocab.concept WHERE domain_id = 'Procedure' AND standard_concept = 'S'"
    }
  ],
  "compose": {
    "include": [
      {
        "system": "http://snomed.info/sct",
        "concept": [
          {
            "code": "80146002",
            "display": "Appendectomy"
          },
          {
            "code": "232717009",
            "display": "Coronary artery bypass graft"
          },
          {
            "code": "816077007",
            "display": "MRI of brain"
          },
          {
            "code": "38102005",
            "display": "Cholecystectomy"
          },
          {
            "code": "73761001",
            "display": "Colonoscopy"
          }
        ]
      },
      {
        "system": "http://www.ama-assn.org/go/cpt",
        "concept": [
          {
            "code": "44970",
            "display": "Laparoscopy, surgical, appendectomy"
          },
          {
            "code": "33533",
            "display": "Coronary artery bypass, single arterial graft"
          },
          {
            "code": "70551",
            "display": "Magnetic resonance imaging, brain, without contrast"
          },
          {
            "code": "45378",
            "display": "Diagnostic colonoscopy"
          }
        ]
      },
      {
        "system": "http://hl7.org/fhir/sid/icd-10-pcs",
        "concept": [
          {
            "code": "0DTJ4ZZ",
            "display": "Resection of appendix, percutaneous endoscopic approach"
          },
          {
            "code": "B030ZZZ",
            "display": "MRI of brain"
          },
          {
            "code": "0FT44ZZ",
            "display": "Resection of gallbladder, percutaneous endoscopic approach"
          }
        ]
      }
    ]
  },
  "domain": "Procedure",
  "expansionSql": "SELECT vocabulary_id, concept_code, concept_name FROM vocab.concept WHERE domain_id = 'Procedure' AND standard_concept = 'S'"
}