OMOP Observation-domain codes (example subset)

omop-observation-codes OMOP domain: Observation 2 includes

Codes that route a FHIR Observation to the OMOP `observation` table (qualitative findings, social history, etc.). Authoritative expansion: vocab.concept WHERE domain_id = 'Observation' AND standard_concept = 'S' (~132,486 standard concepts).

compose.include

include · SNOMED CT

vocab: SNOMEDloaded ✓ 3 codes

http://snomed.info/sct

Code	Display
365981007	Tobacco smoking behavior - finding
133899007	Postoperative care
160573003	Alcohol intake

include · LOINC

vocab: LOINCloaded ✓ 3 codes

http://loinc.org

Code	Display
72166-2	Tobacco smoking status
30525-0	Age
46098-0	Sex

Authoritative expansion (run against the loaded Athena vocab)

SELECT vocabulary_id, concept_code, concept_name FROM vocab.concept WHERE domain_id = 'Observation' AND standard_concept = 'S'

Raw JSON

{
  "resourceType": "ValueSet",
  "id": "omop-observation-codes",
  "url": "https://fhir2omop.health-samurai.io/ValueSet/omop-observation-codes",
  "version": "0.1.0",
  "name": "OmopObservationCodes",
  "title": "OMOP Observation-domain codes (example subset)",
  "status": "draft",
  "experimental": true,
  "description": "Codes that route a FHIR Observation to the OMOP `observation` table (qualitative findings, social history, etc.). Authoritative expansion: vocab.concept WHERE domain_id = 'Observation' AND standard_concept = 'S' (~132,486 standard concepts).",
  "extension": [
    {
      "url": "https://fhir2omop.health-samurai.io/StructureDefinition/omop-domain",
      "valueString": "Observation"
    },
    {
      "url": "https://fhir2omop.health-samurai.io/StructureDefinition/omop-expansion-sql",
      "valueString": "SELECT vocabulary_id, concept_code, concept_name FROM vocab.concept WHERE domain_id = 'Observation' AND standard_concept = 'S'"
    }
  ],
  "compose": {
    "include": [
      {
        "system": "http://snomed.info/sct",
        "concept": [
          {
            "code": "365981007",
            "display": "Tobacco smoking behavior - finding"
          },
          {
            "code": "133899007",
            "display": "Postoperative care"
          },
          {
            "code": "160573003",
            "display": "Alcohol intake"
          }
        ]
      },
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "72166-2",
            "display": "Tobacco smoking status"
          },
          {
            "code": "30525-0",
            "display": "Age"
          },
          {
            "code": "46098-0",
            "display": "Sex"
          }
        ]
      }
    ]
  },
  "domain": "Observation",
  "expansionSql": "SELECT vocabulary_id, concept_code, concept_name FROM vocab.concept WHERE domain_id = 'Observation' AND standard_concept = 'S'"
}